PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029773
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 337aa    MW: 36936.9 Da    PI: 8.275
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029773genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.31.9e-09185242562
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  kr++r   NR +A rs +RK  ++ eLe+kv +L++e ++L  ++  l+   + l +e
  Lus10029773 185 KRAKRILANRQSAARSKERKIRYTGELERKVHTLQTEATTLSAQVTVLQRDTSGLNTE 242
                  9*****************************************9998888777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-15181245IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.726183246IPR004827Basic-leucine zipper domain
PfamPF001708.7E-9185243IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.27E-10185236No hitNo description
Gene3DG3DSA:1.20.5.1704.9E-11185239No hitNo description
CDDcd147031.28E-22186235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDSAKYGGKR PLTDDIDQMP EAPQRGWHHR RAHSDTSFRF DDLLLFDPSD LDLSSLDFPN  60
AAPPRGAPMA VDSPSISDDS TSNGCAAPPP NPRARPINHL RSLSVDSDFF DGFGLGYGDE  120
KPGEKGIAAA AGTGGGERRV HHRHSSSMDG SSCSASFEGD SFMDDGMKKA MAPDRLAELS  180
LIDPKRAKRI LANRQSAARS KERKIRYTGE LERKVHTLQT EATTLSAQVT VLQRDTSGLN  240
TENRELKLRL QAMEQQAHLR DALNEALREE VQRLKIAAGQ MPVSNGNPFH RPQYSSQQPP  300
PQQTQQQGLP PQSQPPNSQN SNGQPRRGFP NFGQRV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300925.21e-138hypothetical protein POPTR_0002s07020g
SwissprotQ9MA751e-104VIP1_ARATH; Transcription factor VIP1
TrEMBLA9PIJ91e-138A9PIJ9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s21300.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52143450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.13e-60VIRE2-interacting protein 1